Re: [modeller_usage] modeller_usage Digest, Vol 9, Issue 31

-- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage ------------------------------ Message: 2 Date: Thu, 4 Mar 2010 16:06:27 +1300 From: Joel Tyndall joel.tyndall@otago.ac.nz To: Tom Venken tom.venken@student.kuleuven.be, "modeller_usage@salilab.org" modeller_usage@salilab.org Subject: Re: [modeller_usage] Windows 7 Message-ID: 4528F8D469BACC498077D350651A728530D32519CB@MAIL2.registry.otago.ac.nz Content-Type: text/plain; charset="iso-8859-1" I have installed it ...shouldn't be any issues. Just try it. Pretty sure it will work. ( ican test it if you really want) _________________________________ Joel Tyndall, PhD Senior Lecturer in Medicinal Chemistry National School of Pharmacy University of Otago PO Box?56 Dunedin 9054 New Zealand?? Skype: jtyndall http://www.researcherid.com/rid/C-2803-2008 Pukeka Matua Te Kura Taiwhanga Putaiao Te Whare Wananga o Otago Pouaka Poutapeta?56 Otepoti 9054 Aotearoa Ph / Waea?????????????? +64 3 4797293 Fax / Waeawhakaahua???? +64 3 4797034 -----Original Message----- From: modeller_usage-bounces@salilab.org [mailto:modeller_usage-bounces@salilab.org] On Behalf Of Tom Venken Sent: Wednesday, 3 March 2010 10:51 p.m. To: modeller_usage@salilab.org Subject: [modeller_usage] Windows 7 Hello, At our university we are in the process of migrating our computers from Windows XP to Windows 7. I found no information about the compatibility of Modeller with Windows 7 in the release notes and I couln't find anything in the mailing list either. So does anyone know if Modeller is compatible with Windows 7, i.e. if someone has tested this OS? Kind regards, Tom _______________________________________________ modeller_usage mailing list modeller_usage@salilab.org https://salilab.org/mailman/listinfo/modeller_usage ------------------------------ Message: 3 Date: Thu, 04 Mar 2010 08:13:32 -0800 From: Modeller Caretaker modeller-care@salilab.org To: ithaya raja ithayaraja01@yahoo.co.in Cc: modeller_usage@salilab.org Subject: Re: [modeller_usage] Solving modeller problem-reg Message-ID: 4B8FDC2C.3010400@salilab.org Content-Type: text/plain; charset=ISO-8859-1; format=flowed On 2/28/10 8:40 AM, ithaya raja wrote: > I did align my target to the template by using align2d command the > alignment file had been successfully created. executing py model script, > it is showing mod9v7.exe error sending report and the modeller > simultaneously stopped. So i need your help to understand the problem > what could be? and let me know how to solve the problem else any other > alternative...? It sounds like you are on a Windows system, and the Modeller binary crashed. This could be due either to a problem with your machine's hardware (e.g. faulty memory) or a bug in Modeller. You can check for bad hardware by trying the same script on a different machine. If that still crashes, it's likely a bug in Modeller - in that case I would need to be able to reproduce the problem in order to fix it, so would need you to send me exactly the same input files you're using when the crash occurs. Ben Webb, Modeller Caretaker -- modeller-care@salilab.org http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage ------------------------------ Message: 4 Date: Fri, 5 Mar 2010 15:21:47 +0530 From: Ajeeta kaushiki ajeetakaushiki@gmail.com To: modeller_usage@salilab.org Subject: [modeller_usage] HETERODIMER GENERATION Message-ID: e9cdb5fa1003050151p21ed05e4k661c7dbacca6f580@mail.gmail.com Content-Type: text/plain; charset="iso-8859-1" Hi I have to generate a hetero dimer . The entire length of protein is 1500 amino acid . The first dimer is from 150-410 aa and next one is from 786-1188 aa , I have modelled this two domains separately , Now I have to map it on a known Homo Dimer present in the template pdb to generate as a heterodimer . Kindly guide or is there any other way to merge the coordinates . Thanks & Regards Ajeeta