I am doing a project on comparative modelling, by using modeller. My problem is the following:
I am trying to make an input file with PDB structures aligned in PIR format. However, when I am reading the modeller manual, I see that the worked example is in the form:
P1;2ald structureX:2ald:2:@:363:@:aldolase:human muscle:2.00:0.17 *
If you go to the section "display/download file", in the PDB website, you will get the usual big file. But when I have a look at this file, I see that ATOM has three coordinates: -20.521 45.890 70.464
How from these coordinates I get the :2:@:363:@: ??? Is there a formula that transforms it?
I would be grateful if you could give me a hint on this.
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