On 4/21/06, modeller_usage-request@salilab.org < modeller_usage-request@salilab.org> wrote:

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Today's Topics:

1. help (biocompr)
2. CHAINS_all Updates (Alex Brown)
3. Re: CHAINS_all Updates (Modeller Caretaker)

---------- Forwarded message ----------
From: "biocompr" <biocompr@163.com>
To: modeller_usage@salilab.org
Date: Thu, 20 Apr 2006 01:22:45 +0800 (CST)
Subject: [modeller_usage] help
hi:

I find the question in the past posts ,bu i do not find the answer.

I am new user to the modeler, I have started with the basic tutorial, I have difficulty with plotting the dope scores with GNU plot,

when I plot the two dat files '1bdma_dope.dat','TVLDH_dope.dat'(from the tutorials folder) I get the graph plotted(Dope score vs Residue Index), but the two graphs are not aligned, as shown in the tutorial html file. how to align the graphs. hope someone could help me with this silly doubt.

Thank you very much.

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450亿双！相当于170万立方米的木材，大约需要砍伐2500万棵大树！

---------- Forwarded message ----------
From: "Alex Brown" <alexander.brown@tech.mrc.ac.uk>
To: < modeller_usage@salilab.org>
Date: Thu, 20 Apr 2006 13:31:02 +0100
Subject: [modeller_usage] CHAINS_all Updates

Hi.

I was wondering if it is possible to get updates to the CHAINS_all.seq database.

If not, where can I get hold of an updated PIR-formatted file of PDB sequences with values in the resolution field?

Many thanks,

Alex Brown

---------- Forwarded message ----------
From: Modeller Caretaker <modeller-care@salilab.org>
To: Alex Brown < alexander.brown@tech.mrc.ac.uk>
Date: Thu, 20 Apr 2006 14:28:28 -0700
Subject: Re: [modeller_usage] CHAINS_all Updates
Alex Brown wrote:
> I was wondering if it is possible to get updates to the CHAINS_all.seq
> database.
>
> If not, where can I get hold of an updated PIR-formatted file of PDB
> sequences with values in the resolution field?

You can rebuild the databases yourself from the original PDB files. See
the relevant page in the Modeller wiki:
http://salilab.org/modeller/wiki/Rebuilding_sequence_databases

Alternatively, you can download updates, when available, from our
supplemental data file download page, which is linked from that wiki
page and from the main 'download & installation' page.

Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org http://www.salilab.org/modeller/
Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage

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