Re: [modeller_usage] RMSD based clustering of models

csreddy@ncbs.res.in wrote: > By using modeller, I have generated 100 models. My next task is to cluster > these models based on RMSD. Is there any option in the modeller to cluster > models based on RMSD? Please let me know.

Sure, you can do simple RMSD-based clustering. See the cluster_cut argument to transfer_xyz: http://salilab.org/modeller/9v2/manual/node181.html

This is also used by automodel.cluster(): http://salilab.org/modeller/9v2/manual/node65.html

Ben Webb, Modeller Caretaker