Re: [modeller_usage] modeling of movement of domain

On 2/11/12 4:25 AM, Ahmadreza Mehdipour wrote: > My script is as follows:

OK, you've set up the scoring function (set of restraints) but you haven't optimized it (found the minimum). For example, you might want to do some basic conjugate gradients, using a script similar to the one at http://salilab.org/modeller/9.10/manual/node258.html

Ben Webb, Modeller Caretaker