Hello,<br><br>I had already sent a mail but did got any response. Please help me out in this problem. Which alignment method should I go for?<br><br>I have done alignment through salign as mentioned in advance tutorial  but i think it dosent gives good alignment.File AIRE_mult.ali and align2d_mult are attached. <br>
Thats why I separately aligned template sequences with protien sequence using align2d.py one by one and then wrote the result in one file by myself i-e. Mannual_Alignment.ali. <br><br> Is this the rite way ? or M doing wrong?<br>
<br>Which way should I use ?<br><br><br>Regards,<br>Thanks<br><br> <br>