Riadh HAMMAMI wrote: > I have a problem concerning the output directory in modeller. > > I’m running script from different location (“mod9v6 > /script/location/model-full.py”). The generated models (including > other files) are located in the running folder. I would like to set > the output directory to a fixed location (for e.g. the same of the > script “/script/location/”). > > is there any issue ?
There is no way to set the "output directory" in Modeller - files are generated in the current directory. To generate these files in a different directory, the easiest way is to 'cd' into that directory first. You will simply need to modify your automodel script to read in the alignment file from a different directory (since by default that will also be read from the current directory).
Ben Webb, Modeller Caretaker