Dear modellers,<br><br>what&#39;s the best way to refine the structure of a 46 amino acid long insertion which is not aligned with any of the templates? As far as I know loop refinement can be applied to shorter parts of the protein. As a matter of fact I&#39;ve already tested the slow mode but this part still looks disordered. I have also performed a PSI-BLAST search but haven&#39;t found any pdb structure which matches this part of my target sequence.<br>
<br>thanks in advance.<br>Tom<br>