On 05/15/2012 05:59 PM, Xiao-Ping Zhang wrote: > I got the following error when trying to run a old python script (see > below) that worked very well before. A couple of days ago, I removed the > Java came from the system (Fedora 13) and installed Java from java.com > (jdk-7u4-linux-i586.rpm, jre-7u4-linux-i586.rpm) to fix a crash problem > of Jalview. > > I wonder if the problem is related to the new Java or some other > problems.
Modeller doesn't use Java, so I doubt this is the cause of your problem.
> modeller.parallel.communicator.RemoteError: IndexError: user_form__E> > Functional form 8195 out of range from<Slave on localhost>
OK, so the master is telling you that one of the slaves encountered a problem. You can look in the .slave output files to find which slave it was - there may be some more information in there. The error suggests that your restraints file is corrupted - maybe a filesystem problem such as the disk filling up or quota exceeded?
Ben Webb, Modeller Caretaker