Re: [modeller_usage] using an external multiple sequence alignment

On 9/4/14, 5:04 AM, ashika torikora wrote: > I was wondering if one could use an external multiple sequence alignment > (instead of align2d or equivalent functions) with modeller and how I > could go about doing that. Thanks for any help you could provide.

Sure - you don't have to do anything special. You just need to make sure the alignment is in the PIR format that Modeller understands.

Ben Webb, Modeller Caretaker