Re: [modeller_usage] In what are the initial structures different?

On 04/08/2012 11:58 PM, BIN ZHANG wrote: > I have a question about the differences of the initial structure built > for homology modeling. Can anyone tell me how exactly are these initial > structures different? Do they differ in the secondary structures in > uncertain regions? I cannot find this information in the manual.

See http://salilab.org/modeller/9.10/manual/node470.html, in particular step 3 and substep 3. The initial structures are simply randomized by calling selection.randomize_xyz().

Ben Webb, Modeller Caretaker