Re: [modeller_usage] use bovin rhodopsin as template

jinlian05@lzu.cn wrote: > I want to use MODELLER9v1 to model the protein 3D structure, it belongs to the > GPCR family, I choose bovin rhodopsin as the template. I want to only use the > transmember regions of the template, but i dont know how to restraints the > template sequence.Or is there another method i can use, please?

If you want to use only part of a template sequence, simply align your model sequence only with that part of the template.

Ben Webb, Modeller Caretaker