Re: [modeller_usage] General Question

Brandon Guida wrote: > Does anyone know whats going on here? I am trying to exit stage 2 but > when I add that constriant to the model-single.py file all I get is the > following log file and no models being built. As soon as I remove the > exit command I get model the models.

Setting exit_stage to 2 is supposed to make automodel exit before building any models, so it sounds like everything is fine: http://salilab.org/modeller/manual/node53.html

You should, however, find an unoptimized initial model (distorted average of template structures) with the .ini file extension.

Ben Webb, Modeller Caretaker