So how to I pick the "best" model from these multiple models. I assume these multiple models are produced from the differential order of my templates.  
On Tue, Sep 24, 2013 at 5:16 PM, Modeller Caretaker <modeller-care@salilab.org> wrote:
On 09/24/2013 02:14 PM, HIDDEN wrote:
These different restraints due to the order of my templates do seem to
affect my side chain modelling.

Right, that's what I said.


When I switch the order of my
templates in salign.py, and do the whole procedure again, I get a model
where the side chains are positioned differenty

Yes, this will happen. I'm not sure what you want me to say other than to simply repeat myself: you need to build multiple models.


        Ben Webb, Modeller Caretaker
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