Dear Ben and Oscar,
Thank you for the suggestions. Sorry if my query is not clear. To explain, I am trying to do loop modeling and at some situation I have to do cooperatively for about 12 loops. So, here I need to implement the multiple processing in modeller. I am here attaching the script (for single loop) that I have prepared to do on my 12 core processor. But, unfortunately I could not execute this because of the python script error, which I could not trace. From this point, I would like to get suggestion and help from your side. Please do the needful correction to my scripts and let me know where did I went wrong.
Thank you a Lot
On Fri, Apr 19, 2013 at 9:28 PM, Modeller Caretaker < modeller-care@salilab.org> wrote:
> On 4/19/13 1:31 AM, Lalith Kumar wrote: > >> I am running mod9v11 on Intel Xeon with 12 cores processor. I have found >> that modeller is utilizing only single processor. Even though there are >> few older posts regarding the execution of modeller processors on >> multiple processors, I am unable to implement them. Sorry, I am newbie >> to python. >> > > Since you don't say what you've tried, or what problems you ran into, it's > difficult to help you. Modeller doesn't use all the processors by default. > To take advantage of multiple cores, you can either split your job manually > (as Oscar suggests) or have Modeller do it for you automatically. To do the > latter, you need to set up a parallel job object and then call > a.use_parallel_job(). How you create the parallel job object depends on how > you want to parallelize your job (e.g. whether you want to use a batch > scheduling system). To just use 12 cores on the local machine, something > like the following should work: > > a = automodel(...) > j = job(host='localhost') > for i in range(12): > j.append(local_slave()) > a.use_parallel_job(j) > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/**modeller/http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/**listinfo/modeller_usagehttp://salilab.org/mailman/listinfo/modeller_usage >