Re: [modeller_usage] Automatically find gaps in the alignment

On 2/4/15 8:35 AM, Edelmiro Moman wrote: > Great! > > But can I insert that directly within the selection like this? > > class MyModel(automodel): > def select_atoms(self): > return selection(self.get_insertions(aln, minlength=1, > maxlength=30, extension=0, include_termini=True))

Yes - although you'll need to read the alignment first. There's a method read_alignment() which returns it. (Note that this is basically what the default loopmodel.select_loop_atoms() method does, except that it includes deletions too.)

Ben Webb, Modeller Caretaker