
31 Mar
2025
31 Mar
'25
1:14 p.m.
Hi Fred, I think you'll need to change the name of your known to match what's in your .pir alignment file, and make them match between the header lines. Try leaving off the .pdb extension
>P1;6KG7 structureX:6KG7:8:A ... etc
see https://salilab.org/modeller/10.6/manual/node501.html#alignmentformat
Jed Goldstone Woods Hole Oceanographic Institution