I had a similar problem running on a linux box.
>1. When I try 'mod model-default'I get 'bash: mod: command not found' I have the same error. Try just 'mod6v1 topfile'.
>2. When I try '/usr/local/bin/modeller6v1/bin/mod6v1 model-default'I get >'STOP' This worked check your log file 'model-default.log' I have been running it by 'mod6v1 topfile' and it seems to work fine.
>3. When I try '/usr/local/bin/modeller6v1/bin/mod6v1_i386-absoft >model-default'
Make sure 'model-defualt' is in the local directory that your running it from.
I hope this helped.
Michael Buck
************************************************ Michael Buck NCSU Genetics mjbuck@unity.ncsu.edu Phone (919)515-5759 Fax (919)515-3355 http://www4.ncsu.edu/~mjbuck *************************************************