[modeller_usage] Minimize structure energy

Hi all,

I've only joined this mailing list lately, so pardon me if this question was asked and answered before.

We wish to perform energy minimization to a model we created. We were wondering whether we can use your automodel for that, via "use your own initial model": http://www.salilab.org/modeller/manual/node26.html#SECTION:initialmodel

If it's possible, what should be the alignment file, since the sequence we want to use is the same as the model?

Thank you, Dana.

__ Dana Sachyani Joel Hirsch's Lab Faculty of Life Sciences Tel Aviv University Ramat Aviv, Israel e-mail: danashah@post.tau.ac.il