jinlian05@lzu.cn wrote: > after running the scripts, it appears some errors: ... > KeyError: 'No such residue: 37:A'
Yes, that's the same error you reported before. Please read my previous post.
> The residue numbers in the model are really the same as residue numbers in the > template.
No - they're not. You are building a single-chain model, so Modeller will not assign it a chain ID. And the residue numbers would only match if your alignment contained no gaps.
> After 'mod9v1 model-segment.py', it produce the 'tm-mrg.ini' and > 'tm-mrg.scr'files, if the script is wrong, dose it produce results else?
You will also get one or more .pdb files if the script runs to completion.
> ps: is there any diffference between the .ini files and .pdb files?
Of course - the .ini file is simply the target sequence threaded onto the template structure. It is unoptimized.
Ben Webb, Modeller Caretaker