4 Feb
2015
4 Feb
'15
7:35 a.m.
Hello,
I am in this situation (last script in the page):
http://salilab.org/modeller/wiki/Missing%20residues
In summary: I have PDB files with short gaps and want to produce gap-less models just from one template each. The models should be identical to the templates except, obviously in the missing regions. I do not care much about the accuracy of the predictions for those regions.
The aforementioned script does exactly that. The problem is that I need to define all the gaps manually.
The question is: can Modeller identify and/or report those gaps (position and length) in order to help us to automatise the task?
If not, are you aware or another tool that does that or should I write an ad hoc script?
Best regards,
--
Edelmiro Moman, PhD
ProSciens, computer-aided drug design
2-4 rue du Palais de Justice
L-1841 Luxembourg
Phone : +352 2728-2588
E-mail : moman@prosciens.com
http://prosciens.com