Hi,
I thought that the script was woriking well but after running a while the modeller gives the following error:
IOError: openf5__225E> File does not exist: file-not-found pdbnam__217W> Filename for PDB code not found: adsl.B99990001.pdb Directories: ./ Extensions : :.atm:.pdb:.ent:.crd openf5__224_> Open 11 OLD SEQUENTIAL file-not-found openf5__225E> File does not exist: file-not-found
I checked the variable env.io.atom_files_directory and it is set to './' ...what am I doing wrong !? Any ideia !?
Thanks,
On 9/27/05, Modeller Caretaker modeller-care@salilab.org wrote: > > Ricardo Nicoluci wrote: > > Sorry, I really forgot to attach the script file. > > I was trying to put generate.transfer_xyz between quotations marks. > > > > Now, if someone could comment the script, I would appreciate... > > You call a.make() twice, so you'll build all your models twice, which is > inefficient. Get rid of the first a.make() call. > > a.loop.md_level is the same as a.md_level - i.e. you should remove the > quotes from ' refine.very_slow'. > > You don't need to pass topology_model, parlib, or toplib in the > loopmodel() constructor, since these are the defaults. > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage >
-- Ricardo de Paula Nicoluci PhD Student Medicinal Chemistry Laboratory IFSC - University of Sao Paulo Sao Carlos - SP - Brazil