11 Nov
2008
11 Nov
'08
11:24 a.m.
vidhya ganesh wrote: > I am new to modeller. I am using mod9v4. I have quite few doubts. I > performed homology modeling of particular protein , done all steps and > got a model. But i have to know, how to build ions in my model??
Ions are built in the same way as any other HETATM residue - just use the '.' residue type in your alignment file and set env.io.hetatm to True, and Modeller will copy the ion residue from the template to the target. See http://salilab.org/modeller/9v5/manual/node18.html
Ben Webb, Modeller Caretaker
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