[modeller_usage] Number problem

Dear sir,

I am trying to model a allosteric protein, my problem is that the number of residues in alignment file(with template and target sequence) and pdb file is different b'cos in PDB file there is a gap in the atoms and HETATM.

So modeller is giving error at check alignment, and giving no. of residues in alignment and pdb file are different.

Can you please give me any suggestion or advice how to sort this problem

with regards Hemant

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