model_loop

Hi,

I have tried in vain to get model_loop to work properly using either modeller6v1 (directly using the model_loop script in examples/tutorial-model) or modeller6v0 (when asking for modelling two loops at once). The modelled structures are 'blasted up' with numerous atoms far away from the core structure. However, asking for modelling one loop at once using modeller6v0 is find.

The option SET DO_LOOP in __model.top is failling similarly.

A slight detail PDB_EXT is applied to both sequence.BL00..., sequence.DL00... and sequence.IL00... files

That's too bad as the new loop procedure looks promising.

Thanks,

Gilles