Try to match the names of the known structure file in the alignment file and the top file. Remember also that the name is case-sensitive .
Han
_____
From: modeller_usage-bounces@salilab.org [mailto:modeller_usage- bounces@salilab.org] On Behalf Of 서주현 Sent: Monday, October 18, 2004 9:03 PM To: modeller_usage@salilab.org Subject: [Spam][modeller_usage] Modeller stopped with no specific error message
Dear modellers !
I automatically generated .ali, .top file with python script. And I executed modeller with python script “ os.popen(“mod6v2 model.top”) “. But modeller stopped in about one second with no result(model). In log file, most strange thing was that there was no specific error message. I can’t figure out this error……Is there anyone who can solve this problem? Any help will be much appreciated.. I attach my .ali file and .top file. And message in log file is in below.
Kind, OS, HostName, Kernel, Processor: 4, Linux Canddy 2.4.18-14 i686 Date and time of compilation : 07/16/2002 11:42:16 Job starting time (YY/MM/DD HH:MM:SS): 2004/10/18 21:05:28.434
Dynamically allocated memory at finish [B,kB,MB]: 2200483 2148.909 2.099 Starting time : 2004/10/18 21:05:28.434 Closing time : 2004/10/18 21:05:29.297 Total CPU time [seconds] : 0.84
Sincerely, Joo-Hyun Seo
Joo-Hyun Seo School of Chemical Engineering & Institute of Molecular Biology and Genetics Seoul National University, Seoul 151-742, Korea
Tel)+82 2 880 7528 Fax)+82 2 874 1206 E-mail) mailto:seojoohyun@nate.com seojoohyun@nate.com, mailto:01191219079@nate.com 01191219079@nate.com
Joo-Hyun Seo,
Molecular Biotechnology & Biomaterials Lab.,
School of Chemical Engineering,
Seoul National University
Tel)+82 2 880 7528 Fax)+82 2 874 1206 E-mail) seojoohyun@nate.com, 01191219079@nate.com
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