Hello again!
Actually I understood what is going wrong... modeller renumbers everything so at first it finds the residues of chain A that are missing... However, the next ones will be 128-130 and not 1-3... Is there a way to keep the initial numbering and not let modeller renumber my structures?
Sorry for being stubborn :)
Cheers
Panagiotis
2009/10/26 Modeller Caretaker modeller-care@salilab.org
> Panagiotis L. Kastritis wrote: > >> Thank you for your immediate response. >> it gives an error, saying 'no such residue 1:B' >> > ... > > Can you tell me what i am doing wrong? >> > > I would have thought it was obvious. ;) You are trying to select residue 1 > in chain B, but there is no such residue. In fact, looking at 1a2k in PDB, I > see that the first residue in chain B is numbered 4, so there is no residue > '1' (or 2 or 3). You simply need to fix the residue numbers in your script. > > > Ben Webb, Modeller Caretaker > -- > modeller-care@salilab.org http://www.salilab.org/modeller/ > Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage >