Hello

I have been doing the tutorial http://salilab.org/modeller/wiki/Missing%20residues

I have generated the alignment.ali file containing the pdb file 1qg8 and the 1qg8_fill sequences. (I basically copied them from the web site). I have gotten “automodel” to work without any problems. However, when I try run “loopmodel” it fails. Again, I am using the script directly from the web site for loop modeling (attached). When I attempt to run it, Modeller loads it libraries etc but then fails with the following error printed, not in log, but to the screen.

 File “loop-refine.py”, line 19, in ?

 a.make()

Does anyone have any insights as to what I could be doing incorrect?

Thanks, Steve