At 03:38 PM 11/14/01 +0800, Tsu-Sheng Wang wrote: >Dears: > > When I run below program, it will be crash. > >INCLUDE >SET OUTPUT_CONTROL = 1 1 1 1 1 >SET ATOM_FILES_DIRECTORY = '/usr/local/lib/pdb' >SET OUTPUT = 'SHORT' # 'LONG' >SET SIGNIF_CUTOFF = 8 3 >SET SEARCH_RANDOMIZATIONS = 10 >SET STOP_ON_ERROR = 2 >CALL ROUTINE = 'sequence_srch', SEGFILE = 'ny10.chn', SEQUENCE = 'ny10' > > I want to use this program to get the alignment and using the alignment >to get the template sequence and get the model by homology modelling. > The ny10.chn is one chain protein with 68 a.a. , and I set the >ATOM_FILES_DIRECTORY is the all PDB files in my server. This program will >be crash after abour the 45 min. I don't know what's wrong. My server is >RedHat Linux 7.1 with PIII 1G cpu and 512Mb ram.
7.1 is notorious for its bugs. It crashes randomly blastpgp jobs too at certain conditions. I would advise you to reproduce it on 6.2.
>Your friendly, >Jack Wang > >
-- Azat Badretdinov, Accelrys