Dear Modeller users,

I would like to ask for help on two problems:

1) I do not get log files after running optimization. I am certain that it is not a matter of them taking really long to be made because I have been using Modeller for 3 months now and I have not gotten a log file. I do however, get "pdb.ini" "pdb.rsr" and "pdb.D000001" (contains info on maximal shift, energy changes and gradients).

2) I have a series of molecules that I would like to apply the same constraints to, and then optimize. Is there a script I can use to optimize all the files in one go?

Thanks in advance for the help,
Abdullah

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