criteria for best template....after comparison of many structures

hello fellow modellers.... im trying to automate modeller to model some 200 proteins. i could generate a script which selects the the group of template. and my compare.top compares all these templates and produces the output file called compare.log.

BUT I DONT know what criteria i should use to select the best template out of the bunch. i attached my

compare.top compare.log files with this mail.(as compar.tar) ..can any one help me ......... what information i should look in LOG file to select best template(s). if it is dendrogram..... how to do it...

many thanx in advance gowtham graduate student ICGEB New Delhi INDIA