Hi All,
After sending e-mail yesterday, I received several
e-mails and all told me I should see the .log file in the same directory. But I
am sure there is no .log file in the directory. I am using MODELLER 6v2 for
Windows and my operation system is Window 2000. I run "mod model-default" in
windows command prompt "C:\mod6v2\examples\tutorial-model>". Following is the
model-default.top file:
# Homology modelling by the MODELLER TOP routine
'model'.
INCLUDE
# Include the predefined TOP
routines
SET OUTPUT_CONTROL = 1 1 1 1
1 #
uncomment to produce a large log file
SET ALNFILE =
'alignment.ali'
# alignment
filename
SET KNOWNS =
'5fd1'
#
codes of the templates
SET SEQUENCE =
'1fdx'
#
code of the target
SET ATOM_FILES_DIRECTORY = './:../atom_files'
# directories for input
atom files
SET STARTING_MODEL=
1
#
index of the first model
SET ENDING_MODEL =
1
# index of the last
model
# (determines how many models to calculate)
CALL ROUTINE =
'model'
# do homology modelling
After running "mod model-default", I only got six
files: "1fdx.V99990001, 1fdx.D00000001, 1fdx.B99990001, 1fdx.sch, 1fdx.rsr and
1fdx.ini. I can open the 1fdx.B99990001 by a viewer.
Thanks for all your help,
Dong