16 May
2020
16 May
'20
3 a.m.
Thanks Ben!
Best, Qinghua
On 5/15/20 9:01 PM, Modeller Caretaker wrote: > On 5/14/20 4:11 PM, Qinghua Liao wrote: >> Thanks a lot for your guide. I just figured it out to use loopmodel >> to optimize the loop. >> I am going to build up a large number of conformations of the loop by >> setting a.loop.ending_model to a large value. >> >> Just another question, will set "a.ending_model" more than 1 help a >> little bit, as the total number will be a.ending_model * >> a.loop.ending_model? > > a.ending_model controls how many models of the entire protein are > generated. It makes sense to increase that from 1, particularly if you > are not sure where your loop termini should be. > > Ben Webb, Modeller Caretaker