Hi everyone,

I am working on the tutorial in http://salilab.org/modeller/wiki/Missing%20residues.  I have my pdb files in C:\Users\Sajeewa\Desktop\protease_project\modeller_practice directory. In the script to generate the model with all residues

# directories for input atom files
env.io.atom_files_directory = ['.', '../atom_files'] 
should this be changed as 

env.io.atom_files_directory = ['C:/Users/Sajeewa/Desktop/protease_project/modeller_practice'] ?

I don't understand what it means by 

'.', '../atom_files'

Could you please explain?



Thank you
Sajeewa Dewage