17 Jul
2007
17 Jul
'07
9:49 p.m.
hori koshii wrote: > Hi all, just a short question to make sure if: > the assess_dope method in MODELLER accounts for all atoms when > calculating the dope energy profile for each residue?
DOPE is calculated for all heavy atoms. See modlb/atmcls-mf.lib for the defined atom types, and for more detail the DOPE publication: http://salilab.org/pdf/174_SheSalProtSc2006.pdf
Ben Webb, Modeller Caretaker
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