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Hi i'm trying to get the generic unix build of modeller to run on a amd64 bix running fedora core 3. I've had a look at the python paths, and played with a few variables. It would seem the python interpreter cannot find the site packages, but imports the modeller addons fine. Does anyone have a tip on how to get the embedded python to find the site packages?
export PYTHONPATH=/usr/lib64/python2.3/ #export PYTHONHOME=/usr/local/modeller8v0/bin/lib/python2.3 export PYTHONHOME=/usr/lib64/python2.3/
[kbranson@culpeper ~]$ mod8v0 -
MODELLER 8v0, Apr 15, 2005 03:15pm
PROTEIN STRUCTURE MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2005 Andrej Sali All Rights Reserved
Written by A. Sali with help from B. Webb, M.S. Madhusudhan, M-Y. Shen, M.A. Marti-Renom, N. Eswar, F. Alber, M. Topf, B. Oliva, A. Fiser, R. Sanchez, B. Yerkovich, A. Badretdinov, F. Melo, J.P. Overington, E. Feyfant University of California, San Francisco, USA Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK
Kind, OS, HostName, Kernel, Processor: 4, Linux culpeper.parkville.hsn.csiro.au 2.6.10-1.766_FC3smp x86_64 Date and time of compilation : 04/15/2005 15:36:51 MODELLER executable type : i386-intel8 Job starting time (YY/MM/DD HH:MM:SS): 2005/05/14 11:21:41.002
'import site' failed; use -v for traceback >>> dir() ['ModellerError', '__builtins__', '__doc__', '__name__', 'alignment', 'density', 'energy_data', 'environ', 'group_restraints', 'info', 'io_data', 'libraries', 'log', 'model', 'modfile', 'profile', 'sequence_db', 'topology', 'util']
Dr Kim Branson Peter Doherty Fellow Protein Structure and Function St Vincents Institute for Medical Research 41 Victoria Parade, Fitzroy Victoria 3065, Australia. Phone: +613 9288 2480 Fax: +613 94162 676 Ph +613 9662 7136 kbranson@svi.edu.au kim.branson@gmail.com www.svi.edu.au