On
4/5/14, 8:05 AM, flavio seixas wrote:
> I'm interested in using a crystal structure deposited in the PDB
> (structure A). However, there are two important loops missing.
> There is another homologous structure B from another source organism,
> where those loops are well defined inside electron density. I like to
> use the experimental data from this template B to model the missing
> loops in the structure A.
Why not just model using both structures as templates? If you're worried
that structure B will "mess up" the model in the non-loop regions, align
it just with A in those regions and just with B in the loop regions.
Ben Webb, Modeller Caretaker
--
modeller-care@salilab.org http://www.salilab.org/modeller/Modeller mail list:
http://salilab.org/mailman/listinfo/modeller_usage_______________________________________________
modeller_usage mailing list
modeller_usage@salilab.orghttps://salilab.org/mailman/listinfo/modeller_usage