Re: [modeller_usage] cyclic peptide modeling

Giacomo Bastianelli wrote: > I tried as you suggested, however I cannot have the > cyclic form of my protein.

That doesn't give me much information to go on, but if you send me your input files, I can take a look.

> I tried also writing differently the IDs ('1' or '1:' or '1:A')..

The example I sent you works, although obviously if your C terminus is not at residue number 54, you'll have to change that. The N terminus should always be 1, unless you have done something very unusual.

Ben Webb, Modeller Caretaker