18 Nov
2004
18 Nov
'04
6:28 p.m.
Dear all,
Let's say that I have two pdb files of protein A and protein B and that approximate interactions of the two proteins are known. Then can I get a complex structure using MODELLER by restraining the distances of two or three interactions between A and B in the top file with the following type of alignment file?
>P1;A structureX:A --AAAAA--/------------* >P1;B structureX:B -------------/--BBBBB--* >P1;AB sequence:AB --AAAAA--/--BBBBB--*
Cheers, Han