31 Aug
2010
31 Aug
'10
3:25 p.m.
> You have to either keep the complete template sequence in the PDB file, > or modify the template PDB to remove the residues you don't want. An > alignment that achieves what you want without modifying the PDB is: > > target: AAAAAAAAAAA-------AAAAAA > template 1: BBBB-------BBBBBBBBBBBBB > template 2: ZZZZZZZZZZZ-------ZZZZZZ > > Ben Webb, Modeller Caretaker > > Is it algorithmically difficult to add a function that will select a range of residue in one template and Modeller will exclude them without touching the alignment? When having multiple templates and several unwanted regions this procedure becomes very tedious.