Hi Omar,

Presumably if you know the rotamer the lysine adopts it is from a solved crystal structure, with good B-factors for the atoms?  Anyway, Coot is a crystallographic model building program that lets you play with rotamers (http://www.biop.ox.ac.uk/coot/).

Cheers,
James


On 9 October 2010 05:38, Omar Piņa <pibe05@gmail.com> wrote:

Hi,

I need to model a protein with the lysine all straight (stuck-up?). How can I say to modeller that only create models with the lysine in that form?? This Lysine is known to be like that. Thanks!!

Omar

_______________________________________________
modeller_usage mailing list
modeller_usage@salilab.org
https://salilab.org/mailman/listinfo/modeller_usage




--
Dr. James Irving PhD
Research Associate
Cambridge Institute of Medical Research
Wellcome Trust/MRC Building
University of Cambridge
Hills Road
Cambridge CB2 0XY
UK