2 Oct
2004
2 Oct
'04
8:59 p.m.
> > Since I know this PDB is probably a good model and it won't come up in > seq_search I was wondering how I could manually update CHAINS_all.seq > or create my own sequence database.
The latest release of MODELLER (version 7v7, released last month) has a new command called SEQFILTER that can be used to cluster PDB sequences. You can use MAKE_CHAINS (also in the latest release) to collect the PDB chains prior to running SEQFILTER.
--- Eswar Narayanan, Ph.D Mission Bay Genentech Hall 600 16th Street, Suite N474Q University of California - San Francisco San Francisco, CA 94143-2240 (CA 94158 for courier) Tel +1 (415) 514-4233; Fax +1 (415) 514-4231 http://www.salilab.org/~eashwar