Hi Abhilasha,
You can start by running the scripts given in the examples directory. You'll have to start with a template(s) and an alignment of the template(s) with the target sequence in PIR format. If I rememebr correctly the examples directory has some such files and scripts for executing some modeling routines. The later pages of the manual describe in the various options available. BTW are you running modeller in UNIX or windows.
raghu
On Fri, 24 Feb 2006, abhilasha kirti wrote:
> Sir > we have just now started working with modeller.we > would like to have step wise guide for preparing input > file and running modeller,as in the manial also it is > not mentioned so clearly. > Please do the needful,we will be ever greaful to u. > Thanking u > Abhilasha >