Hello,

First have a look at how you build a model from multiple templates: http://salilab.org/modeller/manual/node21.html

Then just make sure that, in your alignment, the templates align with the part of the protein you want to model.

>P1; PDBA
structureX:PDBA: 1: A: 10: A::::
AAAAAAAAA--------------------*
>P1; PDBB
structureX:PDBB: 1: A: 10: A::::
---------------------BBBBBBBBB*
>P1; Model
sequence:Model: 1: A: 20: A::::
AAAAAAAAABBBBBBBBB*

I *think* this is the correct approach but honestly I can't be certain because I can't check it now.

Regards,

João [...] Rodrigues
@ http://stanford.edu/~joaor/



2009/11/24 leuven <leuven@yeah.net>

Does anybody know how to achieve this?
Thank you very much.

在2009-11-22，leuven <leuven@yeah.net> 写道：
-----原始邮件-----
发件人:leuven <leuven@yeah.net>
发送时间:2009年11月22日 星期日
收件人:modeller_usage@salilab.org
主题:[modeller_usage] how to assign different template for different regions?


Dear Sir:
   I would like to build models assining different templates for different regions. For exmple: PDB-A for 1-150aa, PDB-B for 151-220aa and so on. How to achieve this? Because different template has different homolog with different regions.
  Thank you very much.

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