Re: [modeller_usage] ERROR: No alignment

Joydeep wrote: > Hi, I'm trying to model a large protein(763 amino acids) with a > distant template obtained from mGenThreader...but when i run the > model.py command (as shown in tutorial), i get the following: > -------------------------------------------------------------------- > Type 'mod8v2' to run Modeller. _modeller.error: check_a_335E> No > alignment.

You should check the .log file for additional information. If this is not informative, please send your full files (i.e. input PDBs, Python script, and alignment) so we can figure out your problem - see http://salilab.org/modeller/manual/node11.html

Ben Webb, Modeller Caretaker