[modeller_usage] how to analyse the output file of align2d.py

mkapsa__637W> No residue topology library is in memory.

Better radii would be used if topology.read() is called first.

iup2crm_280W> No topology library in memory or assigning a BLK residue.

Default CHARMM atom type assigned: N --> N

This message is written only for the first such atom.

I checked for the template sequence in the pdb_95.pir. but unfortunately I could not find any template sequence for the templates which I selected from the blast result.