Re: [modeller_usage] modeller_usage Digest, Vol 12, Issue 17

On 5/8/13 12:37 AM, aixintiankong wrote: > thanks for you help. should i use the the entire second template(loop is > disordered) sequence or only part of the disordered sequence to aglian?

You would definitely need to exclude the ligand and any part of the sequence that interacts with the loop (otherwise Modeller will have a hard time positioning the ligand, since it will get conflicting information). But you can include the rest of the protein if you want - since you said the sequences are very similar I doubt it would make much difference either way.

Ben Webb, Modeller Caretaker