Mauricio Carrillo Tripp wrote: > I ran into the same problem. I searched the wiki but couldn't find a > solution. From the description provided in the thread is not obvious > how to proceed. Is there a working script that could be used as a > starting point to run parallel jobs in a cluster using PBS?
The solution is the same as before - we don't have a PBS cluster, so haven't written a startup mechanism for it (only for SGE). If you do have a PBS cluster and a little bit of Python knowledge, it should be straightforward for you (or others) to write such a PBS class using the existing SGE classes as an example. But nobody has done that yet.
> Is there a way to specify the initial random seed used by each > modeller script?
Sure - set rand_seed when you create your environ object; see http://salilab.org/modeller/9v5/manual/node105.html
For example, env = environ(rand_seed=-2000)
Ben Webb, Modeller Caretaker