Re: [modeller_usage] loop refinement with disulfide patch

M. Seigneuret wrote: > Unfortunately, the script stopped after a few seconds. Nothing special > in the log (except that it was short), but this at the command prompt: ... > TypeError: special_patches() takes exactly 1 argument (2 given) > > Strange. It seems to complain that special_patches has 2 arguments > instead of 1, while it has actually 1 in your script and 2 in the manual > examples.

What's strange about that? It just means that my example was wrong. ;) It should say

def special_patches(self, aln):

of course, just as in the manual. If in doubt, trust the manual examples. They are tested - quick examples in emails are not.

Ben Webb, Modeller Caretaker