Hi!
 
My name is Amanda and I`ve read that changing modeller seed helps to achieve a better model. In my top file, where can I put the new comand? And how to write it? I know that the number must be negative. Sorry for the stupid question.
Thank you in advance!
 
Amanda Maia
 
INCLUDE                                                       # Include the predefined TOP routines
SET OUTPUT_CONTROL = 1 1 1 1 1                # uncomment to produce a large log file
SET ALNFILE  = 'novo_alinhamento.ali'            # alignment filename
SET KNOWNS   = '1MDY' '1NKP' '2QL2' '1HLO'   # codes of the templates
SET SEQUENCE = 'twist1'                               # code of the target
SET STARTING_MODEL = 1
SET ENDING_MODEL = 100
CALL ROUTINE = 'model'                               # do homology modelling


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