Hi!

 

My name is Amanda and I`ve read that changing modeller seed helps to achieve a better model. In my top file, where can I put the new comand? And how to write it? I know that the number must be negative. Sorry for the stupid question.

Thank you in advance!

 

Amanda Maia

 

INCLUDE                                                       # Include the predefined TOP routines

SET OUTPUT_CONTROL = 1 1 1 1 1                # uncomment to produce a large log file
SET ALNFILE  = 'novo_alinhamento.ali'            # alignment filename
SET KNOWNS   = '1MDY' '1NKP' '2QL2' '1HLO'   # codes of the templates
SET SEQUENCE = 'twist1'                               # code of the target
SET STARTING_MODEL = 1
SET ENDING_MODEL = 100
CALL ROUTINE = 'model'                               # do homology modelling